1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgatcttctttctccaaatcctctctcataactctgatttcgtacttgtgtatttgagctcacgctctgtttctctcaccacagCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAAGTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACG
species | Arabidopsis thaliana |
transcript | AT3G11940.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCGCGCGACGCAAACGATCTTCAG CCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCEST: gi|164109524|gb|ES007598.1|ES007598
genomic: ATTCGCGCGACGCAAACGATCTTCAGgtgatcttct ... ctcaccacagCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTC
EST: GCGCGACGCAAACGATCTTCAG CCATGGCCACCGCCGCAGEST: gi|124842381|gb|EH926818.1|EH926818
genomic: GCGCGACGCAAACGATCTTCAGgtgatcttct ... ctcaccacagCCATGGCCACCGCCGCAG
EST: TTCGCGCGACGCAAACGATCTTCAG CCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGACAGGCGCTCACT
genomic: TTCGCGCGACGCAAACGATCTTCAGgtgatcttct ... ctcaccacagCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAG-CAGGCGCTCACT
aactctgatttcgtacttgtgtatttgagctcacgctctgtttctctcaccacagCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAAGTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACG
ctctgtttctctcacc CT-rich tract
tgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcttctttctccaaatcctctctcataactctgatttcgtacttgtgtatttgagctcacgctctgtttctctcaccacagCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAAGTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CACCGCCG