1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtttctccaactttttgggaacctatttcaaaagtttcttctatcttactgtagaagtggcttctctttcaatagccacgacattttcgtatgctgacttgatagttactgttcttggaatgattgattgagtttcttatggtgtttggcaacttttctaatggtgcttttttcttttgttttatttgcagAAATCAATTTACAAAGAAACTGATGAGGCTAAG
species | Arabidopsis thaliana |
transcript | AT3G11670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGTGGATTCAAGAACAGTGAATTTGTTGAGAAGCTCAAAACCAGCTTT AAATCAATTTACAAAGAAACTGATGAGGCTAAG
genomic: TGAGTGGATTCAAGAACAGTGAATTTGTTGAGAAGCTCAAAACCAGCTTTgtaagtttct ... ttatttgcagAAATCAATTTACAAAGAAACTGATGAGGCTAAG
ttatggtgtttggcaacttttctaatggtgcttttttcttttgttttatttgcagAAATCAATTTACAAAGAAACTGATGAGGCTAAG
ttctaat putative branch site (score: 2)
tgcttttttcttttgt putative PPT
ttttttcttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctccaactttttgggaacctatttcaaaagtttcttctatcttactgtagaagtggcttctctttcaatagccacgacattttcgtatgctgacttgatagttactgttcttggaatgattgattgagtttcttatggtgtttggcaacttttctaatggtgcttttttcttttgttttatttgcagAAATCAATTTACAAAGAAACTGATGAGGCTAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA