1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtagaccaacccaattggcaactgtttgttggttttgcaactgtgtaatctgctttgaattgtgaacaaaattattgatttatgttgattacattgcagTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTG
species | Arabidopsis thaliana |
transcript | AT3G11170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTG TGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAEST: gi|86069069|gb|DR364826.1|DR364826
genomic: CTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaaacttaa ... tacattgcagTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACA
EST: CTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTG TGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGTCGGTCAEST: gi|125186617|gb|EL201571.1|EL201571
genomic: CTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaaacttaa ... tacattgcagTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGTCGGTCA
EST: CTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTG TGGACATGGTAGTTTCTCAAATGATCCG
genomic: CTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaaacttaa ... tacattgcagTGGACATGGTAGTTTCTCAAATGATCCG
gtaatctgctttgaattgtgaacaaaattattgatttatgttgattacattgcagTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTG
aaaattattgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtagaccaacccaattggcaactgtttgttggttttgcaactgtgtaatctgctttgaattgtgaacaaaattattgatttatgttgattacattgcagTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTG
- - - ccaaccc
- - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa