1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagccattttgatatcctacttcaatttcgttgcttcttaatctgactcggttcatcatcagtttaggattctttcttcgtaaaaaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCGGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTC
species | Arabidopsis thaliana |
transcript | AT3G10850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|86023772|gb|DR319525.1|DR319525
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|152038306|gb|BP813348.2|BP813348
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|86023773|gb|DR319526.1|DR319526
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|152035101|gb|BP844575.2|BP844575
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|86027937|gb|DR323690.1|DR323690
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|152035013|gb|BP842123.2|BP842123
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|86023775|gb|DR319528.1|DR319528
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGA-AACTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|86023774|gb|DR319527.1|DR319527
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: CGATGAAGATCTTCCACGTTCCTTGTCTGCAAGA-AACTTACTCTTATCT GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCEST: gi|152034408|gb|BP827689.2|BP827689
genomic: CGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAAC-TACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: ACGATGAAGATCTT-CACGTTCCTTGTCTGCAAGACAACTACTCTTATCT GATAATCGATGAGAGCGCCGGAGACGCGGGGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
aatctgactcggttcatcatcagtttaggattctttcttcgtaaaaaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCGGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTC
atctgac putative branch site (score: 3)
ttcgtaaaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccattttgatatcctacttcaatttcgttgcttcttaatctgactcggttcatcatcagtttaggattctttcttcgtaaaaaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCGGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA