1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatttgattttcctccttatgagttttttgtttttagtctctcacatgttattgttctctaattttggcttgttgttgggttgttttgtttcacctgtagGCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTTTGTATATGATTAGGACAGTAAAAGTTGAAGACTTTCTCAAAGATTTGAT
species | Arabidopsis thaliana |
transcript | AT3G09560.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGT GCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTTEST: gi|116396576|gb|EG439168.1|EG439168
genomic: CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGTgtaagttgat ... tcacctgtagGCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTT
EST: CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGT GCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTT
genomic: CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGTgtaagttgat ... tcacctgtagGCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTT
atgttattgttctctaattttggcttgttgttgggttgttttgtttcacctgtagGCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTTTGTATATGATTAGGACAGTAAAAGTTGAAGACTTTCTCAAAGATTTGAT
ctctaat putative branch site (score: 3)
ttttgtttc putative PPT
tctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgattttcctccttatgagttttttgtttttagtctctcacatgttattgttctctaattttggcttgttgttgggttgttttgtttcacctgtagGCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTTTGTATATGATTAGGACAGTAAAAGTTGAAGACTTTCTCAAAGATTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
gatttga
- - - - - - - - - - - - - - - - - - - - ctcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg