1 5' 3' | 2 5' 3' | 3 5' 3' |
...acacatgcaaataaacggatctgggttttctaaaaatcacttttttctgtatgtagttgtttctgttgctaaaaaaattgtgttttgaatcatttttcagATGAAATTGTGAGTTCTCCGAGTTATATGCATCCGTTAGAATCAAAGCGGTAATCAAAAGCAGAATTTAGAGGATTGAAAAAGATGGTTTTGGGGTGTTT
species | Arabidopsis thaliana |
transcript | AT3G08760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATCCGTAGTTTCAGTTTCGTCCTAGAATTTCTTTTCTTGTCTGTTCCAG ATGAAATTGTGAGTTCTCCGAGTTATATGCATCCGTTAGAATCAAAGCGGT
genomic: TATCCGTAGTTTCAGTTTCGTCCTAGAATTTCTTTTCTTGTCTGTTCCAGgtttgaacta ... catttttcagATGAAATTGTGAGTTCTCCGAGTTATATGCATCCGTTAGAATCAAAGCGGT
tctgtatgtagttgtttctgttgctaaaaaaattgtgttttgaatcatttttcagATGAAATTGTGAGTTCTCCGAGTTATATGCATCCGTTAGAATCAAAGCGGTAATCAAAAGCAGAATTTAGAGGATTGAAAAAGATGGTTTTGGGGTGTTT
tgctaaa putative branch site (score: 2)
tcatttttc putative PPT
taaaaaaattgtgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacatgcaaataaacggatctgggttttctaaaaatcacttttttctgtatgtagttgtttctgttgctaaaaaaattgtgttttgaatcatttttcagATGAAATTGTGAGTTCTCCGAGTTATATGCATCCGTTAGAATCAAAGCGGTAATCAAAAGCAGAATTTAGAGGATTGAAAAAGATGGTTTTGGGGTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
acacatg
- - - - aaataaa
- - - - - - - - - - - - - - - - aaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg