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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaggttatatgagtattgactgtgttggcgttgaagtgtatgatcagtagttgttgtcattggaaattctacagtttgcttgtcatattctctttgcagCTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACCTAATATTGCTTCCGAGGTATACAATAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGA

Basic information

species Arabidopsis thaliana
transcript AT3G07690.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07690.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G090747_T02 (Zea mays), 3'ss of exon 2
taaggttatatgagtattgactgtgttggcgttgaagtgtatgatcagtagttgttgtca-ttggaaattctacagtttgct-tgtcatattctctt--tgcagCTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACCTAATATTGCTTCCGAGGTATACAATAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGA
    | || ||   |||   |  || |  |    || | |   |  | | |||||   |  || ||  || ||   |||  | ||   ||||    |  |||||||||  ||||    ||||| ||||| || ||||| ||||||||||||||||| ||  | ||||| ||||| || || |||||||| ||||| ||  ||||
---agatacatatatatgctcaatgcttcctcctaa-tctccaagtatttgttgtcccctctttgattttgtatgatttattatggactattggtataatgcagCTGGAGTTCCATCAGAGAATATTCTTTATCTTGGCGGACCTAATATTGCTTCTGAAATTTACAACAAAGAATATGCAAATGCACGTATTTGTGGAGCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtagttgttgtcattggaaattctacagtttgcttgtcatattctctttgcagCTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACCTAATATTGCTTCCGAGGTATACAATAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGA
                                         tattctcttt  CT-rich tract
                   aaattcta  TA-rich tract