1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttttgcgttggggaatggtttatattcctctcgttatgtagtcttcattgttaattacatatcagtttatctcaagtttctccttcctcatgctttcagGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAA
species | Arabidopsis thaliana |
transcript | AT3G07170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAG GCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCEST: gi|152034944|gb|BP840658.2|BP840658
genomic: GACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAGgttcttatct ... atgctttcagGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACC
EST: GGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAG GCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCEST: gi|152038244|gb|BP811889.2|BP811889
genomic: GGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAGgttcttatct ... atgctttcagGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACC
EST: GGCGGTTCTGGAGACATCTCTACTCGCGTGCGAAAAGTGACTGGGAAGAG GCAAAGGCAGGACGAEST: gi|152034950|gb|BP840772.2|BP840772
genomic: GGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAGgttcttatct ... atgctttcagGCAAAGGCAGGACGA
EST: GGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAG GCAAAGGCAGGACGACA
genomic: GGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAGgttcttatct ... atgctttcagGCAAAGGCAGGACGACA
tcattgttaattacatatcagtttatctcaagtttctccttcctcatgctttcagGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAA
tgttaat putative branch site (score: 3)
tttctccttcctcatg putative PPT
ttaattacatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgcgttggggaatggtttatattcctctcgttatgtagtcttcattgttaattacatatcagtttatctcaagtttctccttcctcatgctttcagGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - -ggtttat
- - - - - - - - - - - - - -cctctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctcaa