1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctttgatgtttttgtagttgtacaatgtgtagtttttgttttttgtttgagaaaatgtgccaaatccgatgttgaattgttgtttttgtttgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTCCATATGACAAGATCAAGAGGATGGTC
species | Arabidopsis thaliana |
transcript | AT3G07110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|116476045|gb|EG518637.1|EG518637
genomic: GGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|86071403|gb|DR367160.1|DR367160
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|86071400|gb|DR367157.1|DR367157
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|125030007|gb|EL102276.1|EL102276
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTACCCGCTTGAAEST: gi|116476054|gb|EG518646.1|EG518646
genomic: CTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|47830930|gb|CK120614.1|CK120614
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|86071402|gb|DR367159.1|DR367159
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|164050239|gb|ES071405.1|ES071405
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: TCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|164015052|gb|ES195831.1|ES195831
genomic: TCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCAEST: gi|47828463|gb|CK118147.1|CK118147
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|125255044|gb|EL269129.1|EL269129
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|125048029|gb|EL120298.1|EL120298
genomic: CGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCEST: gi|47832308|gb|CK121992.1|CK121992
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCC
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|116476052|gb|EG518644.1|EG518644
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|116476053|gb|EG518645.1|EG518645
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: TTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|86071404|gb|DR367161.1|DR367161
genomic: TTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|125313020|gb|EL327105.1|EL327105
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAEST: gi|116447425|gb|EG490017.1|EG490017
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|116476043|gb|EG518635.1|EG518635
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|47828023|gb|CK117707.1|CK117707
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|47832259|gb|CK121943.1|CK121943
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|124927244|gb|EL004999.1|EL004999
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAEST: gi|125308477|gb|EL322562.1|EL322562
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGC
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGC
tttgagaaaatgtgccaaatccgatgttgaattgttgtttttgtttgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTCCATATGACAAGATCAAGAGGATGGTC
tttttgttt CT-rich tract
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgatgtttttgtagttgtacaatgtgtagtttttgttttttgtttgagaaaatgtgccaaatccgatgttgaattgttgtttttgtttgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTCCATATGACAAGATCAAGAGGATGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG