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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG

Basic information

species Arabidopsis thaliana
transcript AT3G05530.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 3'ss of exon 1
---------ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctc-atcttgtg----tttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
         |||        |          |  || |     ||||          ||    |   | | | ||| ||    |||||    ||| |||     || |  | |||| ||   |||  | || || || ||    || || |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| | |
gtttgctctctctctctctctccgcctccgcgggaaaccctagcttttgccccagcgatctcctccatgggatttggtctgatttgtgggggtttgtctcatcgggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCAAGGAGAACCAGGAGAAGATCAAACTCAACAAGCAGCTGCCTTACCTTG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 1
-------------------------------------------------ctcaactgagattgattgaattgaaaagctacgtct--ttcttgttgcaaattggatatgttga--aattgctcatcttgtgtttttctttgatggggattt-------agGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
                                                   |  | ||| ||  |   | |      || ||     |  ||| |   | | || | |   |      || ||   ||| | |||| |||| || |  |||       |||| ||   |||  | || ||  | ||    || || | ||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||| | |
gcaagcccgcctccgctctctctctctctcccctaaccctagatccccctccctccgaggtttttgccagttgcctcctccggtgaatctttgcttggattagggtttccgggtcgtctgatcggtttggggttttttttggtgtgattttggtgcgcagGATGAGCTGCAGCGGACCAACTTGGAGCTGGAATCGTTCAAGGAGAAGATTAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTTCCCTACCTCG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatt--tagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
     | || |         | |    ||| ||  |  |     |    | ||   ||||   |||| |    ||| | | || |  | ||||  ||  ||||| ||   |||  |  | || || ||    || |||  |||||||||||  |||||||| |||||||||||||| ||||||||||||||||| ||| | |
--gtgcggaaaccctagccctagccccgctgcgcgtcgcccagagtg--tcgggactgttctgattgat----ttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
---------------ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
               |  |  |  |||   |     |    | || || | ||   |||     |  ||| ||| |   ||| |        |||||||| |    |  |   |||| ||   |||  | || || || || |  || || | |||||||||||||||||| || || ||||| ||||| ||||||||||||||||| ||| | |
gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtt-tgcttctgatctgtggggtttgtttg------gtttttctcttgccgc-acccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 1
---------------ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG------------
               |  |  |  |||   |     |    | || || | ||   |||     |  ||| ||| |   ||| |        |||||||| |    |  |   |||| ||   |||  | || || || || |  || || | |||||||||||||||||| || || ||||| ||||| ||||||||||||||||| ||| | |            
gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtt-tgcttctgatctgtggggtttgtttg------gtttttctcttgccgc-acccaggacgagttgcagCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCGTTGGCAACATCG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 1
------------------------------------ctcaactgagattgattgaattgaaaa-gcta-cgtctttcttgttgcaaattggata--tgttgaaattgctcatcttgtgtttttctttgatggggattta-gGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
                                    ||    | |   | |    || ||  |  ||| | | |||| |  | |   ||   ||    ||    || || || ||   |   |  |   | | || | | ||||||   ||| || || ||| | ||||  || || |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| |||| ||| | |
gtatactcttttctttctgtttcgtttttttccctgcttctgtaaccctaaccctatcgattacactatcttttttccttcttccgttttcttagccattagggtttctgattttaattgaattgtccttcgtgactgaagGAAGAGTTGCAGAGGACCAATTTGGAATTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 1
------------------------------ctcaac--tgagattgattgaattgaaaa-gcta-cgtctttcttgttgcaaattggata--tgttgaaattgctcatcttgtgttt--ttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
                                 |||  | |   | ||   || ||  |  ||| | | |||  || | |    |   ||    ||    || || || ||   ||   || |||   | || |  |||||||   ||| || || ||| | || |  || || |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| |||| ||| | |
gtacaatctttttgttttttcttctgcttctgtaaccctaaccctaatcctatcgattacactatcttttttgctgcttccgtcttcttagccattagggtttctgatttttaattgaattgtttttggtggctgaagGAAGAGTTGCAGAGGACCAATTTGGAGTTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
--ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
  ||| | |     |  ||   |    |   ||  | | ||||   |  | |  ||| ||  ||  ||| | |  | ||| |  |  |  |||| | |  |||| ||   ||| || || ||  | || || || || || ||||||||||| |||||||||||||||||||| || |||||||||||||| || |||||||
gtctctattctctctctttttctcttta---tatatgtgtctttccgtga-tatgatttgc-gattttgatgaa-tggtggtggtggt--atggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------------------------ctcaactgagattgattgaat-tgaaaagct-acgtctttct-------tgttgcaaattgga--tatgttgaaat-----tgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
                             ||       | |||  |   | ||  |  || | ||||| ||       ||| | |   |||   | ||| ||  |     |  |||      |  |   |  ||| ||  || |||| ||  |||| |||      || |||   ||| ||   || || || || ||||||||||| |||||||| || || || ||||||||||||||| | |
gttttttctgcgccttgagtatggcgcgcctggttcatggttggatatgtatgttagtctgaggtcttgctgggggggtgtagtagcatggggttgtgtcgaggtgtgaattatcaatgatcggatgggtgggattggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCAAGGAGAATCAAGAGAAGATCAAGCTGAATAAGCAGCTGCCTTACCTTG

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 3'ss of exon 1
----------ctcaactgagattgattgaattgaaaagctacgtctttcttg--ttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
          | |   | | | |  | |  |  |      | || ||| ||    ||   | |   |   |  || |  || ||  |  | |  | || ||    | | ||||| ||  | || ||    | ||| ||    ||| ||   ||||| || ||||| ||||||||||||||||| |||||||| || |||||||||||| | |
gtactttctgcacttttcatactcgtggtttcaacgttgcaagtttttgttagtctgtggactttttgattgtaattcactgattcttggatgctgttggaaattggtgtagGACGAGACACAGAGGTTGACTCTCGAGCACGATGCTATGAAGGAAAAAATTAATGAGAATCAGGAGAAGATCAAACTCAATAAACAGCTGCCTTACCTAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86071052|gb|DR366809.1|DR366809
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071034|gb|DR366791.1|DR366791
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|301502331|gb|HO207871.1|HO207871
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071039|gb|DR366796.1|DR366796
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071062|gb|DR366819.1|DR366819
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|124772483|gb|EH862612.1|EH862612
EST:     CTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: CTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071059|gb|DR366816.1|DR366816
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071028|gb|DR366785.1|DR366785
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071063|gb|DR366820.1|DR366820
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071044|gb|DR366801.1|DR366801
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071050|gb|DR366807.1|DR366807
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071057|gb|DR366814.1|DR366814
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071046|gb|DR366803.1|DR366803
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071049|gb|DR366806.1|DR366806
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071047|gb|DR366804.1|DR366804
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071045|gb|DR366802.1|DR366802
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071048|gb|DR366805.1|DR366805
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071065|gb|DR366822.1|DR366822
EST:     ATATCACTAGAGCTACTCNNCTTCTCGACAACGAGATTCNAATTCTCAAG                         GAAGACGCNCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071055|gb|DR366812.1|DR366812
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071061|gb|DR366818.1|DR366818
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071056|gb|DR366813.1|DR366813
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071040|gb|DR366797.1|DR366797
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071024|gb|DR366781.1|DR366781
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071033|gb|DR366790.1|DR366790
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071064|gb|DR366821.1|DR366821
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGACTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071038|gb|DR366795.1|DR366795
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071036|gb|DR366793.1|DR366793
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071035|gb|DR366792.1|DR366792
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071053|gb|DR366810.1|DR366810
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071054|gb|DR366811.1|DR366811
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071029|gb|DR366786.1|DR366786
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071037|gb|DR366794.1|DR366794
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071030|gb|DR366787.1|DR366787
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
EST: gi|86071060|gb|DR366817.1|DR366817
EST:     ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAG                         GAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT
genomic: ATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgcccta ... ggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG
                                      ctttgat  putative branch site (score: 5)
                                 tttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
ctcaact
- - - - - - - - - - - gaaaagc