1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acacgtgtagaacaactagatcatttacaaacattttacaaaaaaaagaagtaatgagtattattgaaattaaaaaaaaaaaatcattacgaaatttcagGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAGGAAACGATAAG
species | Arabidopsis thaliana |
transcript | AT3G04730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATATGAAGGAGAAGGTCGTAAAACCACCAGCCAA GGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTACAEST: gi|301502443|gb|HO207983.1|HO207983
genomic: AATATGAAGGAGAAGGTCGTAAAACCACCAGCCAAgtaagaaact ... gaaatttcagGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGT-CA
EST: AAAGTCGATTTAGAGAATATGAAGGAGAAGGTCGTAAAACCACCAGCCAA GGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCATEST: gi|47829393|gb|CK119077.1|CK119077
genomic: AAAGTCGATTTAGAGAATATGAAGGAGAAGGTCGTAAAACCACCAGCCAAgtaagaaact ... gaaatttcagGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCAT
EST: AAAGTCGATTTAGAGAATATGAAGGAGAAGGTCGTAAAACCACCAGCCAA GGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCATEST: gi|124723564|gb|EH814966.1|EH814966
genomic: AAAGTCGATTTAGAGAATATGAAGGAGAAGGTCGTAAAACCACCAGCCAAgtaagaaact ... gaaatttcagGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCAT
EST: CGTAAAACCACCAGCCAA GGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCAT
genomic: CGTAAAACCACCAGCCAAgtaagaaact ... gaaatttcagGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCAT
aagaagtaatgagtattattgaaattaaaaaaaaaaaatcattacgaaatttcagGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAGGAAACGATAAG
tattattgaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacgtgtagaacaactagatcatttacaaacattttacaaaaaaaagaagtaatgagtattattgaaattaaaaaaaaaaaatcattacgaaatttcagGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAGGAAACGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - agaacaa
- - - - - - - - - - - - - -caaacat
- - - - - - - - - - - - - - - - - - - caaaaaa
- - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -gaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaa