1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgaaaagctttaaattataatcgcatagctccattatcaagacactgtctccaattttcatgtttttgtttgtttgatcttatttctggtataatgcagGGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTGAGAAGGCGGCTTCATCACGGTGATGTAGATGGGAGGAAGTATGAACGCT
species | Arabidopsis thaliana |
transcript | AT3G03610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTGTCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCT GGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTGEST: gi|86038992|gb|DR334747.1|DR334747
genomic: ACCTTTCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCTgtaagagaat ... tataatgcagGGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTG
EST: ACCTTTCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCT GGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTGEST: gi|86038993|gb|DR334748.1|DR334748
genomic: ACCTTTCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCTgtaagagaat ... tataatgcagGGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTG
EST: ACCTTTCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCT GGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCRACTCTG
genomic: ACCTTTCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCTgtaagagaat ... tataatgcagGGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTG
ctgtctccaattttcatgtttttgtttgtttgatcttatttctggtataatgcagGGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTGAGAAGGCGGCTTCATCACGGTGATGTAGATGGGAGGAAGTATGAACGCT
gtttgat putative branch site (score: 5)
aattttcatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaaaagctttaaattataatcgcatagctccattatcaagacactgtctccaattttcatgtttttgtttgtttgatcttatttctggtataatgcagGGGCTTATTCGCTTGTATCTGTTGATATACAAGATGGCATCTGCGACTCTGAGAAGGCGGCTTCATCACGGTGATGTAGATGGGAGGAAGTATGAACGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- gaaaagc
- - - - - - - - - - - - - - - - - - - caagaca
- - - - - - - - - - - - - - - - - - - - - - - - tctccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga