1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttggagtgtttattcaccaccccaataaaaaaggaaacttgggctaggatctgcttggaatcaatcagtctttgatattattggttgtgatgttgcagATACGATTACTCCGGGTATGGACAATCTACTGGAAAG
species | Arabidopsis thaliana |
transcript | AT3G01690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATGAGCTCTTCATTGAGCTTAGCATCCATCTCAAGGTTAATCTTATGGG ATACGATTACTCCGGGTATGGACAATCTACTGGAAAGEST: gi|125024575|gb|EL096844.1|EL096844
genomic: TATGAGCTCTTCATTGAGCTTAGCATCCATCTCAAGGTTAATCTTATGGGgtctgttttt ... gatgttgcagATACGATTACTCCGGGTATGGACAATCTACTGGAAAG
EST: CTTAGCATCCATCTCAAGGTTAATCTTATGGG ACTACGATTACTCCGGGTATGGACAATCTACTGGAAAG
genomic: CTTAGCATCCATCTCAAGGTTAATCTTATGGGgtctgttttt ... gatgttgcagA-TACGATTACTCCGGGTATGGACAATCTACTGGAAAG
ctaggatctgcttggaatcaatcagtctttgatattattggttgtgatgttgcagATACGATTACTCCGGGTATGGACAATCTACTGGAAAG
ctttgat putative branch site (score: 5)
tctttgatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggagtgtttattcaccaccccaataaaaaaggaaacttgggctaggatctgcttggaatcaatcagtctttgatattattggttgtgatgttgcagATACGATTACTCCGGGTATGGACAATCTACTGGAAAG
- - - - - - - - - ccacccc
- - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - aaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa