1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatttatggttgaattaattgaaacctaagtcgagtttggtgatgatttctgtggattaccgatttggtttactgaatcgctttgacatgttgcagaagTCTTTGCTATGGCTGCTACCGCTGCTGCTTCTGTTGTCCGTTACGCACCTGAGGATCATACTCTTCCCAAGCCCTGGAAAGGCCTTATCGATGATAGAAC
species | Arabidopsis thaliana |
transcript | AT3G01540.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATCAGAAGEST: gi|116471329|gb|EG513921.1|EG513921
genomic: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATC---AGgtacgcgttt ... gttgcaga
EST: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATCAGAAGEST: gi|116439182|gb|EG481774.1|EG481774
genomic: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATC---AGgtacgcgttt ... gttgcaga
EST: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATCAGAAGEST: gi|116471353|gb|EG513945.1|EG513945
genomic: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATC---AGgtacgcgttt ... gttgcaga
EST: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATCAGAAGEST: gi|116438332|gb|EG480924.1|EG480924
genomic: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATC---AGgtacgcgttt ... gttgcaga
EST: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATCAGAAGEST: gi|301501301|gb|HO206841.1|HO206841
genomic: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATC---AGgtacgcgttt ... gttgcaga
EST: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATCAGAAG
genomic: CTGCTGGTTCGTTTTCCACATTCAAACTCGACTCTTGAATATCAAATC---AGgtacgcgttt ... gttgcaga
gatttctgtggattaccgatttggtttactgaatcgctttgacatgttgcagaagTCTTTGCTATGGCTGCTACCGCTGCTGCTTCTGTTGTCCGTTACGCACCTGAGGATCATACTCTTCCCAAGCCCTGGAAAGGCCTTATCGATGATAGAAC
ctttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttatggttgaattaattgaaacctaagtcgagtttggtgatgatttctgtggattaccgatttggtttactgaatcgctttgacatgttgcagaagTCTTTGCTATGGCTGCTACCGCTGCTGCTTCTGTTGTCCGTTACGCACCTGAGGATCATACTCTTCCCAAGCCCTGGAAAGGCCTTATCGATGATAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - -aacctaa
- - - - - - - - - - - - - - - - - agtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatc