1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaatcccttgacactgcaatgcgagattgatgtctaacactgagaaacttatggcacacggcagctgaaactgattaatttctctgtttttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGGTTGGTTTAATGGTTTCAGTACCTTCGATTGCTTTGCCTCCCAATGCTC
species | Arabidopsis thaliana |
transcript | AT3G01480.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAG AGAGGGGCATTTACATCATTGAAAGAATGTGCGATTTCATTAGCTTTATCGEST: gi|164110398|gb|ES007607.1|ES007607
genomic: AGCCCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCG
EST: GGCAATACTCGTTACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGEST: gi|124880544|gb|EH959446.1|EH959446
genomic: GGCAATACTCGTTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCG
EST: CCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGEST: gi|116466244|gb|EG508836.1|EG508836
genomic: CCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCG
EST: TTGTTCTTCCGGCAATACTTGTTACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGEST: gi|124710573|gb|EH801975.1|EH801975
genomic: TTGTTCTTCCGGCAATACTCGTTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCG
EST: AGCCCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCAEST: gi|124739170|gb|EH830332.1|EH830332
genomic: AGCCCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCA
EST: CTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTEST: gi|124897236|gb|EH973450.1|EH973450
genomic: CTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTT
EST: AGCCCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAEST: gi|125215144|gb|EL229320.1|EL229320
genomic: AGCCCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGA
EST: TACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGEST: gi|124795318|gb|EH884997.1|EH884997
genomic: TACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCG
EST: TTACACTAAGCAG AGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCG
genomic: TTACACTAAGCAGgttccggtct ... ttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCG
aaacttatggcacacggcagctgaaactgattaatttctctgtttttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGGTTGGTTTAATGGTTTCAGTACCTTCGATTGCTTTGCCTCCCAATGCTC
gattaat putative branch site (score: 3)
tttctctgttttt CT-rich tract
aaactgattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatcccttgacactgcaatgcgagattgatgtctaacactgagaaacttatggcacacggcagctgaaactgattaatttctctgtttttgaatgcagAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGGTTGGTTTAATGGTTTCAGTACCTTCGATTGCTTTGCCTCCCAATGCTC
-caatccc
- - - - - - - - - - - - - - - - - ctaacac
- - - - - - - - - - - - - - - - - - - - - gagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaac