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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcccactgctccgatttgagtatttagggtatgtgtatgagtggatttgacggtattgtgatatatctcagTTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAAT

Basic information

species Arabidopsis thaliana
transcript AT3G01435.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876992|gb|AU237823.1|AU237823
EST:     TTCATCGTCTCTGCCATCTTCACTGTCTCGCGTCGCCGTGTTCGATTGAG                         TTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGA
genomic: TTCATCGTCTCTGCCATCTTCACTGTCTCGCGTCGCCGTGTTCGATTGAGgtactcccac ... tatatctcagTTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGA
EST: gi|47830714|gb|CK120398.1|CK120398
EST:     GTGTTCGATTGAG                         TTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGA
genomic: GTGTTCGATTGAGgtactcccac ... tatatctcagTTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGA
EST: gi|86086183|gb|DR381942.1|DR381942
EST:     CGTCTCTGCCATCTTCACTGTCCTCGCGTCGCCGTGTTCGATTGAG                         TTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGA
genomic: CGTCTCTGCCATCTTCACTGT-CTCGCGTCGCCGTGTTCGATTGAGgtactcccac ... tatatctcagTTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtatttagggtatgtgtatgagtggatttgacggtattgtgatatatctcagTTTGGAGTTCTCTCTCTCTGGTCTAAAAGAAATCGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAAT
                            atttgac  putative branch site (score: 4)
                                          tgatatat  TA-rich tract