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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttttatagttcgtatgcttagctttgcaacccaaatcccttgttatactcatgtgatgatgagctgaaactttcttgccttttttcctgtttgctcagATTGTTTCGGGAGGCGGCTAGGACCACGTCTTCTTGGTAGGATAGATGATTCAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G01040.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476602|gb|EG519194.1|EG519194
EST:     CCTAACCGCTGTTGTTACCCTTGAAGGTGTCAACAAGTGCTCCTCTTTTG                         ATTGTTTCGGGAGGCGGCTAGGACCACGTCTTCTTGGTAGGATAGATGATT
genomic: CCTAACCGCTGTTGTTACCCTTGAAGGTGTCAACAAGTGCTCCTCTTTTGgtaacccctc ... gtttgctcagATTGTTTCGGGAGGCGGCTAGGACCACGTCTTCTTGGTAGGATAGATGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatactcatgtgatgatgagctgaaactttcttgccttttttcctgtttgctcagATTGTTTCGGGAGGCGGCTAGGACCACGTCTTCTTGGTAGGATAGATGATTCAGAG
                          ctttcttgcctttttt  CT-rich tract
                                    tttttt  TA-rich tract