Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86062292|gb|DR358049.1|DR358049EST: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAG GTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
genomic: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGgtactctact ... tcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
EST:
gi|125220359|gb|EL234444.1|EL234444EST: CGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAG GTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
genomic: CGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGgtactctact ... tcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
EST:
gi|125268250|gb|EL282335.1|EL282335EST: CGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAG GTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCACGGTTTGACATATG
genomic: CGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGgtactctact ... tcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCA-GGTTTGACATATG
EST:
gi|86062293|gb|DR358050.1|DR358050EST: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAG GTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
genomic: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGgtactctact ... tcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
EST:
gi|86062295|gb|DR358052.1|DR358052EST: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAG GTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
genomic: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGgtactctact ... tcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
EST:
gi|86062294|gb|DR358051.1|DR358051EST: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAG GTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
genomic: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGgtactctact ... tcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
EST:
gi|86062296|gb|DR358053.1|DR358053EST: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAG GTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
genomic: TCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGgtactctact ... tcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgtcttggttactggaacatatgctgactgttctactttgtctcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCCTCTCACATTCAAACTTC
tgctgac putative branch site (score: 2)
ctgttctactttgtct CT-rich tract
tcttttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactctactgctcgattgttattgaattcgagcatctatctattcattgtgatgattcatttatctttgtcttggaatatagattcttgtgtcttggttactggaacatatgctgactgttctactttgtctcttttaaagGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCCTCTCACATTCAAACTTC
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