1 5' 3' |
...tagaggtaactttattttgtgtttgttggtattgagttctgtacatccatcaggattttcgttgttgtctgagctttcttctattttttttcttatgcagATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAAAATCTGATGAAGAGAGAATAATTGTGGCGAGTAAAGTCTGTGGAGAAG
species | Arabidopsis thaliana |
transcript | AT2G46800.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATATACTACTGAGAATCTTCAA-TTCTGCAACTTTTGTATCTCTTCCTG ATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAEST: gi|86051236|gb|DR346991.1|DR346991
genomic: TATATACTACTGAGAATCTTCAATTTCTGCAACTTTTGTATCTCTTCCTGgtgagccctt ... tcttatgcagATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGA
EST: TATATACTACTGAGAATCTTCAATTTCTGSAACTTTTGTATCTCTTCCTG ATGGAGTCTTCGAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAEST: gi|116485377|gb|EG527969.1|EG527969
genomic: TATATACTACTGAGAATCTTCAATTTCTGCAACTTTTGTATCTCTTCCTGgtgagccctt ... tcttatgcagATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGA
EST: TATATACTACTGAGAATCTTCAATTTCTGCAACTTTTGTATCTCTTCCTG ATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGA
genomic: TATATACTACTGAGAATCTTCAATTTCTGCAACTTTTGTATCTCTTCCTGgtgagccctt ... tcttatgcagATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGA
tccatcaggattttcgttgttgtctgagctttcttctattttttttcttatgcagATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAAAATCTGATGAAGAGAGAATAATTGTGGCGAGTAAAGTCTGTGGAGAAG
tctgagctttcttcta CT-rich tract
tttcttctattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaggtaactttattttgtgtttgttggtattgagttctgtacatccatcaggattttcgttgttgtctgagctttcttctattttttttcttatgcagATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAAAATCTGATGAAGAGAGAATAATTGTGGCGAGTAAAGTCTGTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - -tccatca