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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcacatatctcttcctccgtttggtcatgtacttgtttccgattaatgtattatcttttgttctttctattgaattgatttcgtatctgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTGATGAAGGGACATGAACGTCCATTGACGTTCCTGAGGTACAACAGAAATG

Basic information

species Arabidopsis thaliana
transcript AT2G46290.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86040339|gb|DR336094.1|DR336094
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAA-GTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|86040336|gb|DR336091.1|DR336091
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAA-GTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|19878991|gb|AU239822.1|AU239822
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|116426849|gb|EG469441.1|EG469441
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|86040340|gb|DR336095.1|DR336095
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAA-GTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|116426846|gb|EG469438.1|EG469438
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|164206617|gb|ES022245.1|ES022245
EST:     GCGTTAATCCC-AAGGTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: GCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|86040338|gb|DR336093.1|DR336093
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAA-GTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
EST: gi|86040335|gb|DR336090.1|DR336090
EST:     CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAA                         ATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG
genomic: CCGTCATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATTCAACCAAgtatgtgcac ... tgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgtattatcttttgttctttctattgaattgatttcgtatctgtttgcaagATGAAAAGCTCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTGATGAAGGGACATGAACGTCCATTGACGTTCCTGAGGTACAACAGAAATG
                                           tctgttt  CT-rich tract
      tattatcttttgtt  TA-rich tract