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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggagatagaaaaaaagatcttccttgtggattctgtgattctaatttcttctcagattcgtcaaaattggccttggttgtttaattgtgtagtaatcctattgcattgagctttgaaatttgttgttatgattgttgtcagGTTAATATAATTGATACTCCTGGTCACGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTATGCAGTGTGG

Basic information

species Arabidopsis thaliana
transcript AT2G45030.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45030.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G056393_T01 (Zea mays), 3'ss of exon 1
gtgaggagatagaaaaaaagatcttccttgtggattctgtgattctaatttcttctcagattcgtcaaaattggccttggttgtt-taattgtgtagtaatcctattgcattgagctttgaaatttgttgttatgattgttgt-cagGTTAATATAATTGATACTCCTGGTCACGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTATGCAGTGTGG
                                           | || | | ||      |||   ||  ||    ||| |||   | |   |  | |  |||||||     ||   ||||||  |  | |||  |||    | ||| ||||||| ||||||||||| |||||||| || ||||||||||| || || |||||  | ||||| || || || || || || || ||||| ||||| |
-------------------------------------------tttactgtgttggatagttca--aatgtttcttttgtttgaaatcacattacattgttcctattatgaggaa--ttgaaagctcatcttacaatttaaatgcagATTAATATTATTGATACTCCAGGTCACGTGGATTTCACCATTGAGGTTGAAAGGGCACTCCGTGTTCTTGATGGAGCTATACTTGTACTATGTAGTGTTG

upper sequence: AT2G45030.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA11G16460.1 (Glycine max), 3'ss of exon 1
gtgaggagatagaaaaaaagatcttccttgtggattctgtgattctaatttcttctcagattcgtcaaaattggccttggttgtttaattgtgtagtaatcctat-----tgcattgagctttgaaatttgttgttatgattgttgt--cagGTTAATATAATTGATACTCCTGGTCACGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTATGCAGTGTGG
                                                    || |   ||  |    |||||   ||  || |    ||||  ||||||  | |     |  ||| |  | |  ||| |  ||  |    ||||||  ||| |||| || ||||| || |||||||||||||| || ||||| || || ||||||||||| ||||| || || ||||| ||||| || || || ||||| |
---------------------------------------------------tttttattatctgagtgaattgtggttaattatcgtgttgta-agtaattttgtcttcatatatttatatgtttaatatcctgggaaatgtgttgttgcagATTAACATTATTGACACGCCTGGTCACGTTGATTTTACCATCGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTTCTTTGTAGTGTTG

upper sequence: AT2G45030.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 1
gtgaggagatagaaaaaaagatcttccttgtggattctgtgattctaatttcttctcagattcgtcaaaattggccttggttgtttaattgtgtagtaatcctattgcattgagctttgaaatt-tgttgttatgattgttgtcagGTTAATATAATTGATACTCCTGGTCACGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTATGCAGTGTGG
                                          ||  |   | ||  |    |  | | |  |    |||||||   | |        ||    |    |   ||     ||||  |   |  ||  || ||  |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||| || ||||| |
------------------------------------------ttgcaccctttttgctagatgtttatatattcttttggttgcccattcaaaagaaaa----aaaaaaaaaagaagaaaaatcatccagaaattgttttttgcagGTTAACATAATTGACACTCCTGGTCATGTCGACTTCACCATTGAAGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTCCTTTGTAGTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtagtaatcctattgcattgagctttgaaatttgttgttatgattgttgtcagGTTAATATAATTGATACTCCTGGTCACGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTATGCAGTGTGG
                             aaatttgttgttat  TA-rich tract