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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacgccactccttctttttttttttgtctcgtttaaatttttataaactccataattttatcttaaagtgaatcttttttgttttttttgttccagCTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAAATTATTGAGAATCTCTCCCTCACTTAACCAAAAGCGTTTTTAATCAGAT

Basic information

species Arabidopsis thaliana
transcript AT2G42600.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068707|gb|DR364464.1|DR364464
EST:     NNNNNNCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCA                         CTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA
genomic: TTTTTTCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCAgtaatacgcc ... tttgttccagCTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA
EST: gi|86068624|gb|DR364381.1|DR364381
EST:     NNNNNNCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCA                         CTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA
genomic: TTTTTTCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCAgtaatacgcc ... tttgttccagCTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA
EST: gi|86068657|gb|DR364414.1|DR364414
EST:     NNNNNNCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCA                         CTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA
genomic: TTTTTTCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCAgtaatacgcc ... tttgttccagCTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA
EST: gi|86068606|gb|DR364363.1|DR364363
EST:     NNNNNNCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCA                         CTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA
genomic: TTTTTTCACCTGTTTTTCGGTATCACGAGAATACTACACTTCCCACTCCAgtaatacgcc ... tttgttccagCTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaactccataattttatcttaaagtgaatcttttttgttttttttgttccagCTTTATCGGATATATTTCCTTGATTTTCTCCGATTGTGGTCAATCTGGAAAATTATTGAGAATCTCTCCCTCACTTAACCAAAAGCGTTTTTAATCAGAT
                               tcttttttgttttttt  CT-rich tract
          ataattttatcttaaa  TA-rich tract