1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgccttttcttttgccaatgcaagtttttctcttgtttttgaattttacagacaaaaagaaagcgtttttgtaatgcgtgacataataacttgccttgcaaaccacgcatcatggcctgaattagatttgaacaattgaaagctgagattatgttctgcaatgtctgaactagcttgacttgttttgttcgttcagAGATTTTATTGTGGAGGGAGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACAACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATAC
species | Arabidopsis thaliana |
transcript | AT2G40990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gctgagattatgttctgcaatgtctgaactagcttgacttgttttgttcgttcagAGATTTTATTGTGGAGGGAGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACAACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATAC
gcttgac putative branch site (score: 4)
ttttgttc putative PPT
attatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccttttcttttgccaatgcaagtttttctcttgtttttgaattttacagacaaaaagaaagcgtttttgtaatgcgtgacataataacttgccttgcaaaccacgcatcatggcctgaattagatttgaacaattgaaagctgagattatgttctgcaatgtctgaactagcttgacttgttttgttcgttcagAGATTTTATTGTGGAGGGAGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACAACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG