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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatatcgtagttcaaatctgggattatctactggatttggattttgcttgttagagatattatcaaatatcatagcttagtgatgtgatcgttgaatagaaattgatttgagctttcatgttgcagGACTTGTATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAG

Basic information

species Arabidopsis thaliana
transcript AT2G40290.2
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagcttagtgatgtgatcgttgaatagaaattgatttgagctttcatgttgcagGACTTGTATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAG
                             aattgat  putative branch site (score: 4)
                                         ctttcat  putative PPT
                       aatagaaattgattt  TA-rich tract