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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccataagattgggaaattttcttgctttgccaaaactctgctttctataaactgagatcatgttttgggaagcttatactatgttttgtggaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGG

Basic information

species Arabidopsis thaliana
transcript AT2G39890.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035994|gb|AU237074.2|AU237074
EST:     TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCG                         ATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT
genomic: TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGgtttgttttt ... gaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT
EST: gi|116479428|gb|EG522020.1|EG522020
EST:     TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCG                         ATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT
genomic: TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGgtttgttttt ... gaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaactgagatcatgttttgggaagcttatactatgttttgtggaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGG
                            ttatactatgtttt  TA-rich tract