1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcttccgctttatacctttttatttctccactgaattagtttagctcaggtcttaggatttctaggttcagcttaaaaaaatgggttttgcagagcttagagttaatttcgaatttattgtttgtaacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAGGCAAAAGTTGAGCGATGTCGTGCAACAAGAGACTTAGCTAGCTGTGGAA
species | Arabidopsis thaliana |
transcript | AT2G39810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAG GAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAGEST: gi|116394345|gb|EG436937.1|EG436937
genomic: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAGgttcttccgc ... taacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAG
EST: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAG GAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAGEST: gi|116394328|gb|EG436920.1|EG436920
genomic: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAGgttcttccgc ... taacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAG
EST: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAG GAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAGEST: gi|116394354|gb|EG436946.1|EG436946
genomic: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAGgttcttccgc ... taacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAG
EST: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAG GAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAGEST: gi|116394332|gb|EG436924.1|EG436924
genomic: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAGgttcttccgc ... taacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAG
EST: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAG GAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAG
genomic: GATCGATATCTCTTCCTACGCAGCCTAATTACAGTAGCAAGCCTGTTCAGgttcttccgc ... taacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAG
aatgggttttgcagagcttagagttaatttcgaatttattgtttgtaacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAGGCAAAAGTTGAGCGATGTCGTGCAACAAGAGACTTAGCTAGCTGTGGAA
ttgtaac putative branch site (score: 2)
ttaatttcgaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttccgctttatacctttttatttctccactgaattagtttagctcaggtcttaggatttctaggttcagcttaaaaaaatgggttttgcagagcttagagttaatttcgaatttattgtttgtaacttacagGAGGCGTTGAAACATTTGGCATCTATAAACCTCAGAGAATTATGTAATGAGGCAAAAGTTGAGCGATGTCGTGCAACAAGAGACTTAGCTAGCTGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA