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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacctctgttcctcactcaaaatctctataccaataatttgaatgtttgtgtttatgtagGTGATGCATCTTAAAGAGAGACTAGAGGAAGAAGAAGCAGTGACTAGAACTTTACGAGTTGCTTTTGATGGCTCTATTGTTTCTCTCCCAAGTCTCTCCT

Basic information

species Arabidopsis thaliana
transcript AT2G39690.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384072|gb|EG426664.1|EG426664
EST:     CTTAGAGGAAGGA                         GTGATGCATCTTAAAGAGAGACTAGAGGAAGAAGAAGCAGTGACTAGAACT
genomic: CTTAGAGGAAGGAgtaagcacct ... gtttatgtagGTGATGCATCTTAAAGAGAGACTAGAGGAAGAAGAAGCAGTGACTAGAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttcctcactcaaaatctctataccaataatttgaatgtttgtgtttatgtagGTGATGCATCTTAAAGAGAGACTAGAGGAAGAAGAAGCAGTGACTAGAACTTTACGAGTTGCTTTTGATGGCTCTATTGTTTCTCTCCCAAGTCTCTCCT
    tcctcac  putative branch site (score: 2)
                           aataatttgaatgttt  TA-rich tract