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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaatcttgctctctttcgtattggactgttggagctgtaaacagtggagtttaacattgctacatgctttgtagTTCCGGGAGAATGTGGCAGCTTGGATTTGCTTTCATGATCGGGATGATCTATTCAAAAAGTTTCTACAGAAGGTTCTTCGCCTTAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT2G38770.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38770.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------gtaactaatcttgctctctttcgtattggactgttggagctgtaaacagtggagttta-acattgctac---atgctttgtagTTCCGGGAGAATGTGGCAGCTTGGATTTGCTTTCATGATCGGGATGATCTATTCAAAAAGTTTCTACAGAAGGTTCTTCGCCTTAAAGAG---
                        ||| ||||  ||||||   | || || ||     | | ||  ||  | || | ||||   |||||| |   ||  |||| |||| || ||||||||||| ||||||||||||||| ||||| || | ||| | |||||    ||  |  ||||||||||||| ||||| |||   
tttgaatatggaatatgaaaaatataattaattatgctctgcctggtttttga-----gaaactagaagta-tgtaatttatgaattgcttccctataatttgcagTTTCGAGAGAATGTGGCTGCTTGGATTTGCTTTTATGATAGGAAGGATGTGTTCAAGGCCTTCATTGAGAAGGTTCTTCGGCTTAAGGAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggactgttggagctgtaaacagtggagtttaacattgctacatgctttgtagTTCCGGGAGAATGTGGCAGCTTGGATTTGCTTTCATGATCGGGATGATCTATTCAAAAAGTTTCTACAGAAGGTTCTTCGCCTTAAAGAG
                             gtttaac  putative branch site (score: 3)
                              tttaacatt  TA-rich tract