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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaatcagctactatgtctcttttaatggtcttttgttctactgtttggattactgatgtttccccatttttttgtagCCGAGATGATTAGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAACTACTTCATATTTTCAGGTATTTGCTTCTTGTTTTTGATGCCAATGT

Basic information

species Arabidopsis thaliana
transcript AT2G38620.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatggtcttttgttctactgtttggattactgatgtttccccatttttttgtagCCGAGATGATTAGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAACTACTTCATATTTTCAGGTATTTGCTTCTTGTTTTTGATGCCAATGT
                            tactgat  putative branch site (score: 2)
                                  tgtttccccatttttt  CT-rich tract
                                           atttttttgta  TA-rich tract