1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttctctctctttatctctacaatgtggtattgtgaaattccataagaacactgttcaatattgatggtgactgtgacagGACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAGGGGTTTAGTGAGGACAAAGGAGAGTAAGGAGAAGATCAATGGAGAGGA
species | Arabidopsis thaliana |
transcript | AT2G37660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCACCGTCCTCGTTACCGGTGCCGGTGGAAGAACAG GACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAEST: gi|124796704|gb|EH886383.1|EH886383
genomic: CTCTCACCGTCCTCGTTACCGGTGCCGGTGGAAGAACAGgttctctctc ... actgtgacagGACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAA
EST: CTCGTTACCGGTGCCGGTGGAAGAACAG GACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAEST: gi|124843604|gb|EH928041.1|EH928041
genomic: CTCGTTACCGGTGCCGGTGGAAGAACAGgttctctctc ... actgtgacagGACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAA
EST: TGGAAGAACAG GACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAEST: gi|125232226|gb|EL246311.1|EL246311
genomic: TGGAAGAACAGgttctctctc ... actgtgacagGACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAA
EST: CGGTGGAAGAACAG GACAAATTGTGTATAAGAAATTGAAGGAGAGG
genomic: CGGTGGAAGAACAGgttctctctc ... actgtgacagGACAAATTGTGTATAAGAAATTGAAGGAGAGG
tggtattgtgaaattccataagaacactgttcaatattgatggtgactgtgacagGACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAGGGGTTTAGTGAGGACAAAGGAGAGTAAGGAGAAGATCAATGGAGAGGA
tattgat putative branch site (score: 3)
ttcaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctctctctttatctctacaatgtggtattgtgaaattccataagaacactgttcaatattgatggtgactgtgacagGACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAGGGGTTTAGTGAGGACAAAGGAGAGTAAGGAGAAGATCAATGGAGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA