1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtccattctctgattcctgttttttcattttctaatttcctatttacgggtttttactaatcttctattgatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCG
species | Arabidopsis thaliana |
transcript | AT2G37270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAG TCATGGCCGCCTCCGCAGAAATCGEST: gi|125205065|gb|EL220019.1|EL220019
genomic: AAGCCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCG
EST: CCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAG TCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCEST: gi|124961896|gb|EL036358.1|EL036358
genomic: CCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACC
EST: ATCCCTACTTCTCTCGACACTTATAGAGTTTCAG TCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCAEST: gi|124761847|gb|EH851977.1|EH851977
genomic: ATCCCTACTTCTCTCGACACTTATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCA
EST: TATAGAGTTTCAG TCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCA
genomic: TATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCA
tcattttctaatttcctatttacgggtttttactaatcttctattgatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCG
tcctcc CT-rich tract
taatttcctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccattctctgattcctgttttttcattttctaatttcctatttacgggtttttactaatcttctattgatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCTCCG