1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcttaagtgtcttctctttctatattatattgaatacggagattctagattacttactagattatattgattctccacagGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAG
species | Arabidopsis thaliana |
transcript | AT2G37240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCG GAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCTEST: gi|116467371|gb|EG509963.1|EG509963
genomic: TCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCGgtgagcttaa ... ttctccacagGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCT
EST: TCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCG GAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCTEST: gi|124772970|gb|EH863099.1|EH863099
genomic: TCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCGgtgagcttaa ... ttctccacagGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCT
EST: GGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCG GAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCTEST: gi|125084520|gb|EL144699.1|EL144699
genomic: GGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCGgtgagcttaa ... ttctccacagGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCT
EST: CGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCG GAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCT
genomic: CGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCGgtgagcttaa ... ttctccacagGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCT
tatattgaatacggagattctagattacttactagattatattgattctccacagGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAG
ttctccac CT-rich tract
ttactagattatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttaagtgtcttctctttctatattatattgaatacggagattctagattacttactagattatattgattctccacagGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA