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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagatttgattcgttttctttggtgtttatttttgaattgaaagtttaatccaatctgatttctttgcacttgtgattgctattacgaaattgctattaggttttgtgtaagaatatcaaatgcacatttcatttttatgttttgaaagtggtttctgagaatggatttgtgaaattttggtgtcagGTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGGACCTCGTCAAGTTCCACAGCTAGTAGCGGTTTCCGGTCAGCAACAGCAA

Basic information

species Arabidopsis thaliana
transcript AT2G37160.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878253|gb|AU239084.1|AU239084
EST:     CGCATCCCTCTGGGCTTCTTCACTACACTCATGGCAAAACCGTTACTCAG                         GTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGG
genomic: CGCATCCCTCTGGGCTTCTTCACTACACTCATGGCAAAACCGTTACTCAGgtgaagattt ... ttggtgtcagGTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatgttttgaaagtggtttctgagaatggatttgtgaaattttggtgtcagGTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGGACCTCGTCAAGTTCCACAGCTAGTAGCGGTTTCCGGTCAGCAACAGCAA
                                 atttgtgaaatttt  TA-rich tract