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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatttctctgcctgtaaatgaattggatcaagtctgttgtgacaagaaccctgttttgtaagtttacatgagtatgctaattcatgtctctattggcagCCGAAACTGTAAGATCTGTGTTTGGACCCGTTGTGGAGATTGTAAAATCCTTGAATCTACCTGATTGGCTTGTTCATTGGGGACATCCAGGGAACATG

Basic information

species Arabidopsis thaliana
transcript AT2G36885.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86016138|gb|DR311884.1|DR311884
EST:     GTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCTTCTCTCCCTGGAG                         CCGAAACTGTAAGATCTGTGTTTGGACCCGTTGTGGAGATTGTAAAATCCT
genomic: GTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCTTCTCTCCCTGGAGgtaatttata ... ctattggcagCCGAAACTGTAAGATCTGTGTTTGGACCCGTTGTGGAGATTGTAAAATCCT
EST: gi|124752406|gb|EH842536.1|EH842536
EST:     GTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCTTCTCTCCCTGGAG                         CCGAAACTGTAAGATCTGTGTTTGGACCCGTTGT
genomic: GTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCTTCTCTCCCTGGAGgtaatttata ... ctattggcagCCGAAACTGTAAGATCTGTGTTTGGACCCGTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaccctgttttgtaagtttacatgagtatgctaattcatgtctctattggcagCCGAAACTGTAAGATCTGTGTTTGGACCCGTTGTGGAGATTGTAAAATCCTTGAATCTACCTGATTGGCTTGTTCATTGGGGACATCCAGGGAACATG
                              tgctaat  putative branch site (score: 2)
                                          tctctatt  putative PPT
         ttttgtaa  TA-rich tract