1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttaatagaaagattcaggggaaattgttcttttttgtgtgttgacttttttccaaatgactgttcaataggatcagttctaacattagtgtatgattagATGATAGCATGGCGATATTGATGGCGTTTCAAACACCGGAGCTGGAGATATTAGGATTAACTACTGTGTTTGGTAATGTTTCTACACAAGATGCTACTCG
species | Arabidopsis thaliana |
transcript | AT2G36310.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTTTGGGTAAGCATGAGAAGCTCATTATCGATACAGACCCAGGAATTG ATGATAGCATGGCGATATTGATGGCGTTTCAAACACCGGAGCTGGAGATATEST: gi|124732412|gb|EH823814.1|EH823814
genomic: CGTTTTGGGTAAGCATGAGAAGCTCATTATCGATACAGACCCAGGAATTGgtgagcttct ... gtatgattagATGATAGCATGGCGATATTGATGGCGTTTCAAACACCGGAGCTGGAGATAT
EST: CGTTTTGGGTAAGCATGAGAAGCTCATTATCGATACAGACCCAGGAATTG ATGATAGCATGGCGATATTGATGGCGTTTCAAACAEST: gi|124768190|gb|EH858320.1|EH858320
genomic: CGTTTTGGGTAAGCATGAGAAGCTCATTATCGATACAGACCCAGGAATTGgtgagcttct ... gtatgattagATGATAGCATGGCGATATTGATGGCGTTTCAAACA
EST: CGTTTTGGGTAAGCATGAGAAGCTCATTATCGATACAGACCCAGGAATTG ATGATAGCAATGGCGATATTGATGGCGTTTCAAACA
genomic: CGTTTTGGGTAAGCATGAGAAGCTCATTATCGATACAGACCCAGGAATTGgtgagcttct ... gtatgattagATGATAGCA-TGGCGATATTGATGGCGTTTCAAACA
cttttttccaaatgactgttcaataggatcagttctaacattagtgtatgattagATGATAGCATGGCGATATTGATGGCGTTTCAAACACCGGAGCTGGAGATATTAGGATTAACTACTGTGTTTGGTAATGTTTCTACACAAGATGCTACTCG
ttctaac putative branch site (score: 1)
taacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaatagaaagattcaggggaaattgttcttttttgtgtgttgacttttttccaaatgactgttcaataggatcagttctaacattagtgtatgattagATGATAGCATGGCGATATTGATGGCGTTTCAAACACCGGAGCTGGAGATATTAGGATTAACTACTGTGTTTGGTAATGTTTCTACACAAGATGCTACTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - agaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacat