1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacatctctatctctctatctgttcctttccgacattgtttatattatcctctttcttacccgcatcgtttctgttagCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGAATCAGAGCTTCGACTCCAACGATTCGGATTCTTCCTCAGAGACTACCCA
species | Arabidopsis thaliana |
transcript | AT2G34860.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTTCGCACTCCCTTCGCCTGCTTCTCCGTTTCTAT CTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGAEST: gi|86073323|gb|DR369080.1|DR369080
genomic: TCTCTTCGCACTCCCTTCGCCTGCTTCTCCGTTTCTATgtaacatctc ... tttctgttagCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGA
EST: ATCATCATCTCATCTCTTCGCACTCCCTTCGCCTGCTTCTCCGTTTCTAT CTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGA
genomic: ATCATCATCTCATCTCTTCGCACTCCCTTCGCCTGCTTCTCCGTTTCTATgtaacatctc ... tttctgttagCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGA
tcctttccgacattgtttatattatcctctttcttacccgcatcgtttctgttagCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGAATCAGAGCTTCGACTCCAACGATTCGGATTCTTCCTCAGAGACTACCCA
ttcttac putative branch site (score: 2)
tcgtttct putative PPT
acattgtttatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatctctatctctctatctgttcctttccgacattgtttatattatcctctttcttacccgcatcgtttctgttagCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGAATCAGAGCTTCGACTCCAACGATTCGGATTCTTCCTCAGAGACTACCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT