1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgtgttatcattgattttctctgtaaagttctgatcttgatacgatttattcccctcactaatctgtttctctacttcttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGGAAGGTGTACCATAGCCACGATGGACTCGCACCTCACTCACACGAACCC
species | Arabidopsis thaliana |
transcript | AT2G34470.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGEST: gi|86021185|gb|DR316931.1|DR316931
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGRGAAGGACGGEST: gi|86021192|gb|DR316938.1|DR316938
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGEST: gi|86021189|gb|DR316935.1|DR316935
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGEST: gi|116480488|gb|EG523080.1|EG523080
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGEST: gi|86021191|gb|DR316937.1|DR316937
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGEST: gi|86021187|gb|DR316933.1|DR316933
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGEST: gi|86021188|gb|DR316934.1|DR316934
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGEST: gi|19879192|gb|AU240023.1|AU240023
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: CATCACACNGACCACCATCATCATCATCACGATCATGAGCATGACCACG- -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: CATCACAC-GACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
atcttgatacgatttattcccctcactaatctgtttctctacttcttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGGAAGGTGTACCATAGCCACGATGGACTCGCACCTCACTCACACGAACCC
cactaat putative branch site (score: 2)
tctgtttctctacttc CT-rich tract
atttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgttatcattgattttctctgtaaagttctgatcttgatacgatttattcccctcactaatctgtttctctacttcttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGGAAGGTGTACCATAGCCACGATGGACTCGCACCTCACTCACACGAACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA