1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatctcaaaatttctctttttatgtgaaattttctgtctttcaattgcatttcgttggatcttactacattttcaatttgtcagTATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTG
species | Arabidopsis thaliana |
transcript | AT2G34050.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGCCAAGACTAAATCCCCTGAAGAACTCACTTCGATCTGGGACGAT TATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTATEST: gi|86020272|gb|DR316018.1|DR316018
genomic: CCAGAGCCAAGACTAAATCCCCTGAAGAACTCACTTCGATCTGGGACGATgtaatctcaa ... aatttgtcagTATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTAT
EST: CCAGAGCCAAGACTAAATCCCCTGAAGAACTCACTTCGATCTGGGACGAT TATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTAT
genomic: CCAGAGCCAAGACTAAATCCCCTGAAGAACTCACTTCGATCTGGGACGATgtaatctcaa ... aatttgtcagTATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTAT
ttttctgtctttcaattgcatttcgttggatcttactacattttcaatttgtcagTATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTG
atcttac putative branch site (score: 3)
tacattttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctcaaaatttctctttttatgtgaaattttctgtctttcaattgcatttcgttggatcttactacattttcaatttgtcagTATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA