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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctctttatcttctttctcccgcctttttcctgtgttacagagatgtgattacatgtgtatatagcttctcttttcctctattgaactatctgaatatattactcatctgcttcgattttttctcgctcttcttcagCTTCCTTCGTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGAAGCTCTATGAGTTCAGTGAGCGTCTCAATGCCTCCAAGGACAAGTCTCA

Basic information

species Arabidopsis thaliana
transcript AT2G34040.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475722|gb|EG518314.1|EG518314
EST:     AAAACACTTCTCAATCTTTCTACAGTCTTCTTCTTCCAAAAGAACACCAT                         CTTCCTTCGTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGA
genomic: AAAACACTTCTCAATCTTTCTACAGTCTTCTTCTTCCAAAAGAACACCATgtacgctctt ... tcttcttcagCTTCCTTCGTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGA
EST: gi|86038473|gb|DR334228.1|DR334228
EST:     AAAACACTTCTCAATCTTTCTACAGTCTTCTTCTTCCAAAAGAACACCAT                         CTTCCTTCGTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGA
genomic: AAAACACTTCTCAATCTTTCTACAGTCTTCTTCTTCCAAAAGAACACCATgtacgctctt ... tcttcttcagCTTCCTTCGTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaactatctgaatatattactcatctgcttcgattttttctcgctcttcttcagCTTCCTTCGTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGAAGCTCTATGAGTTCAGTGAGCGTCTCAATGCCTCCAAGGACAAGTCTCA
                        tctgcttcgatttttt  CT-rich tract
     tatctgaatatatta  TA-rich tract