1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaattgtgatttcattttttgttttcagtggacttctctagctgtatcgtattggaactgatctggttactgtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAA
species | Arabidopsis thaliana |
transcript | AT2G31610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAG TTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAEST: gi|164096781|gb|ES047202.1|ES047202
genomic: TGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAGgtgaattgtg ... gtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGA
EST: TCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAG TTTGTAGCGGATGGTGTATTCTGCGCTGAATTGAATGAGGTTCTCACAAGAEST: gi|152035868|gb|BP863417.2|BP863417
genomic: TCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAGgtgaattgtg ... gtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGA
EST: TGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAG TTTGTAGGGGATGGTGTATCCTACGCTGAATTGAATGAGGTTCTAACAAGAEST: gi|124856950|gb|EH941387.1|EH941387
genomic: TGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAGgtgaattgtg ... gtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGA
EST: GCAAGAAGAGAAAG TTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAEST: gi|124855270|gb|EH939707.1|EH939707
genomic: GCAAGAAGAGAAAGgtgaattgtg ... gtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGA
EST: TGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAG TTTGTAGCGGATG
genomic: TGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAGgtgaattgtg ... gtgtttgtagTTTGTAGCGGATG
agtggacttctctagctgtatcgtattggaactgatctggttactgtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAA
aactgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattgtgatttcattttttgttttcagtggacttctctagctgtatcgtattggaactgatctggttactgtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG