1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatacatcggaggaaacactaattgttactactttccttcattctttgtagacaagaatagttttaactcctgtaataatatgttcacgtttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAATTTCTACTACAATTGGAGGCAAAAATGGTGAACCTAAACAG
species | Arabidopsis thaliana |
transcript | AT2G30980.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048164|gb|DR343919.1|DR343919
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048152|gb|DR343907.1|DR343907
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG G-AATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048153|gb|DR343908.1|DR343908
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGNCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048158|gb|DR343913.1|DR343913
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048162|gb|DR343917.1|DR343917
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048161|gb|DR343916.1|DR343916
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048155|gb|DR343910.1|DR343910
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048167|gb|DR343922.1|DR343922
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048168|gb|DR343923.1|DR343923
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048165|gb|DR343920.1|DR343920
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048159|gb|DR343914.1|DR343914
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|164038650|gb|ES006287.1|ES006287
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: GACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048163|gb|DR343918.1|DR343918
genomic: GACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGNCACATAEST: gi|125238189|gb|EL252274.1|EL252274
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: CTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048160|gb|DR343915.1|DR343915
genomic: CTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048169|gb|DR343924.1|DR343924
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|152033639|gb|BP560678.2|BP560678
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|86048157|gb|DR343912.1|DR343912
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAEST: gi|124829587|gb|EH914178.1|EH914178
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGEST: gi|86048156|gb|DR343911.1|DR343911
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATG
EST: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAG GAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
genomic: TTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAGACAACGACAAGgttagttttt ... ttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATA
ttgtagacaagaatagttttaactcctgtaataatatgttcacgtttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAATTTCTACTACAATTGGAGGCAAAAATGGTGAACCTAAACAG
aagaatagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacatcggaggaaacactaattgttactactttccttcattctttgtagacaagaatagttttaactcctgtaataatatgttcacgtttgattttagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAATTTCTACTACAATTGGAGGCAAAAATGGTGAACCTAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - -aaacact
- - - - - - - - - - - - - - - -ctttcct
- - - - - - - - - - - - - - - - - - - - - - - - - -acaagaa