Sequence
atgc intronic sequence ATGC exonic sequence...ttgtggggcttagaatgaaatttggtgaaattatacttgtggcattgcattgtaacagtaaatatcaagtgttatagttatgtgtattctttgataccagATTGGAGAAGATGGGGGCTTTAGATGTATCAATGGTGGTTCATAAGCACGAGGTGTGGCGCTTGTTCACTTGTATATGGCTACATGCTGGGGTTTTTCAT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G29050.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G29050.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv06s0004g04890.t01 (Vitis vinifera), 3'ss of exon 1
ttgtggggcttagaatgaaatt-tggtgaaattatacttgtggcatt-gcattgtaaca-gtaaatatcaagtgttatagttatgtgtattctttgataccagATTGGAGAAGATGGGGGCTTTAGATGTATCAATGGTGGTTCATAAGCACGAGGTGTGGCGCTTGTTCACTTGTATATGGCTACATGCTGGGGTTTTTCAT
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--atgtcacatggagcaatcttctgtttaaattattacgaagatgtgagaatagttgcatgaagggatgatatctaacctacaattctctgcttttgt-ccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAGGTTTGGCGTCTGATCTCTTGTATATGGCTACATGCTGGGGTGTTCCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19876034|gb|AU236865.1|AU236865EST: GCTTTTCAGCCTATGAAAGAGAATCCTCTTCTGGGTCCTTCTTCTTTGAC ATTGGAGAAGATGGGGGCTTTAGATGTATCAATGGTGGTTCATAAGCACGA
genomic: GCTTTTCAGCCTATGAAAGAGAATCCTCTTCTGGGTCCTTCTTCTTTGACgtgggtaacc ... ttgataccagATTGGAGAAGATGGGGGCTTTAGATGTATCAATGGTGGTTCATAAGCACGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcattgtaacagtaaatatcaagtgttatagttatgtgtattctttgataccagATTGGAGAAGATGGGGGCTTTAGATGTATCAATGGTGGTTCATAAGCACGAGGTGTGGCGCTTGTTCACTTGTATATGGCTACATGCTGGGGTTTTTCAT
tattcttt CT-rich tract
taaatatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtggggcttagaatgaaatttggtgaaattatacttgtggcattgcattgtaacagtaaatatcaagtgttatagttatgtgtattctttgataccagATTGGAGAAGATGGGGGCTTTAGATGTATCAATGGTGGTTCATAAGCACGAGGTGTGGCGCTTGTTCACTTGTATATGGCTACATGCTGGGGTTTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -aacagta