1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggttctgtgaaagtttacaaagtaaccctatatggtttcttgctaatttttgactatgtagattgttctaagtgaatatggttgtgtttatggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTC
species | Arabidopsis thaliana |
transcript | AT2G28190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|116429789|gb|EG472381.1|EG472381
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|124779393|gb|EH869336.1|EH869336
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: CTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|125192284|gb|EL207238.1|EL207238
genomic: CTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: AGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|125187016|gb|EL201970.1|EL201970
genomic: AGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: GTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|124803179|gb|EH891608.1|EH891608
genomic: GTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTEST: gi|125204055|gb|EL219009.1|EL219009
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGT
EST: TCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATTACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|116462064|gb|EG504656.1|EG504656
genomic: TCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|124954322|gb|EL029425.1|EL029425
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTEST: gi|125109972|gb|EL162162.1|EL162162
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCT
EST: AGGTACGTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGEST: gi|125315230|gb|EL329315.1|EL329315
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTG
EST: TGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTEST: gi|125311316|gb|EL325401.1|EL325401
genomic: TGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCT
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAEST: gi|125073005|gb|EL137495.1|EL137495
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGA
EST: GGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCAEST: gi|124856337|gb|EH940774.1|EH940774
genomic: GGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCA
EST: TTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|125301301|gb|EL315386.1|EL315386
genomic: TTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: TTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|116438236|gb|EG480828.1|EG480828
genomic: TTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|124990187|gb|EL062456.1|EL062456
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: GAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGEST: gi|124851533|gb|EH935970.1|EH935970
genomic: GAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG GTCCTACGACTGTGAATGTTCGTATCACTGGTCTCAC
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCAC
atttttgactatgtagattgttctaagtgaatatggttgtgtttatggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTC
tgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttctgtgaaagtttacaaagtaaccctatatggtttcttgctaatttttgactatgtagattgttctaagtgaatatggttgtgtttatggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - -caaagta