Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctcttcaatctcgcttcttcttcctccaattttcactctcacttctctaatcgtaatcgatcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA

Basic information

species Arabidopsis thaliana
transcript AT2G27960.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27960.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA12G08760.1 (Glycine max), 3'ss of exon 2
gta-aagctc--ttcaatctcgcttc-ttcttcctccaatt--ttcactctcact-----tctctaatcgtaatcgatcgata--cagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA
||| | ||||  ||| || |  |||| || |  || | |||  || |   | | |     | | || | ||| | | | | |   ||| || || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
gtacacgctcggttccattttccttcgttttctctgcgattaatttaggtttattgattttatttatttgtattggtttgttgttcagACATGTGGTTCTTCCTCCTGAAGTCGCAAAACTGCTTCCCAAGAATCGTCTTCTCTCCGAA

upper sequence: AT2G27960.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA11G19780.2 (Glycine max), 3'ss of exon 2
------gtaaagctct-tcaatctcgcttcttcttcctccaattt-----tcact-----ctcacttctctaatcgtaatcgatcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA
      | |    ||  |     ||| ||  ||| |    |||||     | | |      | | ||   | ||  |  |   | | | ||| || || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
gtacacgcacgattccatttccttcgttttctctgcgattaatttagggtttattgattttttattttctttatattgttttgttgtt-cagACATGTGGTTCTTCCTCCTGAAGTCGCAAAACTGCTTCCCAAGAATCGTCTTCTCTCCGAA

upper sequence: AT2G27960.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA12G08890.1 (Glycine max), 3'ss of exon 1
--------------------------------gtaaagctcttcaatctcgcttcttcttcctcca--attttcactctcac---ttctctaatcgtaatcgatcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA
                                 |     |  | ||  | | || ||  |  |  |  |    || | | |    || | | ||  ||||   | | | ||| ||||| ||||| ||||||||||| || ||||| ||||| |||||||| ||||||||||||
gtaggtatacgcacaattccatttccttcattttctttgtgattaacttagttttttgctggtaaagaaaaaacagttttatggatttttttatattaatttgttgtt-cagACACGTGGTTCTGCCTCCTGAAGTTGCCAAACTGCTTCCTAAGAATCGACTTCTCTCCGAA

upper sequence: AT2G27960.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv06s0061g00810.t01 (Vitis vinifera), 3'ss of exon 2
--------------gtaaagctcttcaatctcgcttcttcttcctccaattttcactctcacttctctaatcgtaatcgatcg-atacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA
              ||||     ||  || | |   ||  ||  |    || |       | |  |  ||  |   | |||    |||||||| || ||||||||||||||||| || ||||| || |  |||||||| |||||||| |||
gtaatagtttcatagtaatttgattgcattttgtacctatttttttgggttcttgggagaattgtttgaa--gatgtggattatgtacagGCATGTGGTTCTTCCTCCTGAAGTGGCCAAACTGCTCCAGAAGAATCGGCTTCTCTCGGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053815|gb|DR349572.1|DR349572
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053847|gb|DR349604.1|DR349604
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|124730226|gb|EH821628.1|EH821628
EST:     ACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: ACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053835|gb|DR349592.1|DR349592
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053806|gb|DR349563.1|DR349563
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053821|gb|DR349578.1|DR349578
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTTCTTC
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTT-CTTC
EST: gi|86053851|gb|DR349608.1|DR349608
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053797|gb|DR349554.1|DR349554
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053820|gb|DR349577.1|DR349577
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053801|gb|DR349558.1|DR349558
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053850|gb|DR349607.1|DR349607
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053822|gb|DR349579.1|DR349579
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053844|gb|DR349601.1|DR349601
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053853|gb|DR349610.1|DR349610
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053808|gb|DR349565.1|DR349565
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053830|gb|DR349587.1|DR349587
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053845|gb|DR349602.1|DR349602
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053834|gb|DR349591.1|DR349591
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|116474540|gb|EG517132.1|EG517132
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053839|gb|DR349596.1|DR349596
EST:     GGTCAGATCCAATACTCCGRGRRATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053838|gb|DR349595.1|DR349595
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053846|gb|DR349603.1|DR349603
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053840|gb|DR349597.1|DR349597
EST:     GGTCAGATCCAATACTCCGAGAANKGCTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTRAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053807|gb|DR349564.1|DR349564
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053802|gb|DR349559.1|DR349559
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053811|gb|DR349568.1|DR349568
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053800|gb|DR349557.1|DR349557
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCTCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053817|gb|DR349574.1|DR349574
EST:     GGTCAGMTCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053809|gb|DR349566.1|DR349566
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|116474537|gb|EG517129.1|EG517129
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053854|gb|DR349611.1|DR349611
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053823|gb|DR349580.1|DR349580
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053813|gb|DR349570.1|DR349570
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053803|gb|DR349560.1|DR349560
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|164009665|gb|ES102377.1|ES102377
EST:     TCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: TCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053827|gb|DR349584.1|DR349584
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053849|gb|DR349606.1|DR349606
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053852|gb|DR349609.1|DR349609
EST:     GTCAGATCCAATACTCCGAGAAATACTGTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GTCAGATCCAATACTCCGAGAAATACT-TCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053837|gb|DR349594.1|DR349594
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053833|gb|DR349590.1|DR349590
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053805|gb|DR349562.1|DR349562
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053842|gb|DR349599.1|DR349599
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053812|gb|DR349569.1|DR349569
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053798|gb|DR349555.1|DR349555
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053799|gb|DR349556.1|DR349556
EST:     GGTCAAATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053818|gb|DR349575.1|DR349575
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053825|gb|DR349582.1|DR349582
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053848|gb|DR349605.1|DR349605
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053836|gb|DR349593.1|DR349593
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053828|gb|DR349585.1|DR349585
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86075134|gb|DR370891.1|DR370891
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053816|gb|DR349573.1|DR349573
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053814|gb|DR349571.1|DR349571
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053832|gb|DR349589.1|DR349589
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053819|gb|DR349576.1|DR349576
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053843|gb|DR349600.1|DR349600
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|125220004|gb|EL234089.1|EL234089
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCCCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053804|gb|DR349561.1|DR349561
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
EST: gi|86053841|gb|DR349598.1|DR349598
EST:     GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAG                         GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT
genomic: GGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGgtaaagctct ... atcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcttcctccaattttcactctcacttctctaatcgtaatcgatcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA
                              ctctaat  putative branch site (score: 3)
             aattttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagctcttcaatctcgcttcttcttcctccaattttcactctcacttctctaatcgtaatcgatcgatacagGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA