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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtggatttcatgtcagatagtgactgaatctttttaaagtttcttttttttatttttggtgtttggttaatgattgttgtgtgtgtttgtgttttcagTTCCAATTGGGTTCTATGGTTTGCAGCATTACCTTTCAATGTTGGGATCATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT

Basic information

species Arabidopsis thaliana
transcript AT2G27810.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 1
ttgtggatttcatgtcagatagtgactgaatctttttaaagtttctttttt-ttatttttggtgtttggttaatgattgttgtgtgtgtttgtg--ttttcagTTCCAATTGGGTTCTATGGTTTGCAGCATTACCTTTCAATGTTGGGATCATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT
 | | || ||  ||     | |    |||||  |||   | |||  ||    ||||  |||  |||       || ||    | |     |||   | |  |||||| |||||  | || ||  | ||||| ||| |||| || || || || ||||||||| |||| ||||| ||||||||||| ||||||||  | || 
gtattgaatttttggagtttcgattttgaatgatttggtattttgattcaaattatggttgaagttgaaaatgtgttttcaattttcacgtgttactgtgtagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCGATATTAGGTTCGTTGATTCTGATTCCGCTTGTGATTGTTCCTGCCATGGGAGGCACTCAC

upper sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 1
---------------------ttgtggatttcatgtcag-atagtgactgaatcttt--ttaaagtttcttttttttatttttggtgtttggttaatgattgttgtgtgtgtttgtgttttcagTTCCAATTGGGTTCTATGGTTTGCAGCATTACCTTTCAATGTTGGGATCATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT
                     |||   |||| ||||    | ||| |    | || |  || |   ||  ||| | |||  || |   | | ||| ||||  ||        |     |||||||||||||||| || ||||| || ||||||||  |||| || ||||| || ||||||||  ||||||| || || ||||| |||||||| |||   |||
gtgagtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatg----tttcagTTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttatttttggtgtttggttaatgattgttgtgtgtgtttgtgttttcagTTCCAATTGGGTTCTATGGTTTGCAGCATTACCTTTCAATGTTGGGATCATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT
                     ggttaat  putative branch site (score: 4)
                                              tgttttc  putative PPT
     tttattttt  TA-rich tract