1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcacttttatcaaaatgttttcatgtgttgtctagtgtcattttgagtttgggattagtaattaacttcatctgtattgattctcttcaccgatgacagGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGAGCTTACTCCTCTTTTCCTAGAGTGGGAGTTACTGGAG
species | Arabidopsis thaliana |
transcript | AT2G26140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGTGAAGGAGAGATTTGATTGATGGCTTGGAGGCGCATCATCACCAAG GTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTCAGAEST: gi|124932540|gb|EL009790.1|EL009790
genomic: ATCGTGAAGGAGAGATTTGATTGATGGCTTGGAGGCGCATCATCACCAAGgtttttgttt ... ccgatgacagGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGA
EST: CTTGGAGGCGCATCATCACCAAG GTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGAEST: gi|125250748|gb|EL264833.1|EL264833
genomic: CTTGGAGGCGCATCATCACCAAGgtttttgttt ... ccgatgacagGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGA
EST: AAGGAGAGATTTGATTGATGGCTTGGAGGCGCATCATCACCAAG GTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGA
genomic: AAGGAGAGATTTGATTGATGGCTTGGAGGCGCATCATCACCAAGgtttttgttt ... ccgatgacagGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGA
gagtttgggattagtaattaacttcatctgtattgattctcttcaccgatgacagGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGAGCTTACTCCTCTTTTCCTAGAGTGGGAGTTACTGGAG
ttctcttcacc CT-rich tract
attagtaattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacttttatcaaaatgttttcatgtgttgtctagtgtcattttgagtttgggattagtaattaacttcatctgtattgattctcttcaccgatgacagGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGAGCTTACTCCTCTTTTCCTAGAGTGGGAGTTACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - -atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - agtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacttca