1 5' 3' | 2 5' 3' |
...tcattttgatcaaaagattttaactttcgattcttttagtaaatgggtcgctctttgtttggactataatgatcagactgctcttgtcttgtgtgattagGAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACGAAGTTATGATGTTGAAGACAGGGTGGTGTCCGTGTCTATACCATCAATA
species | Arabidopsis thaliana |
transcript | AT2G26070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCCTCTCTGCGTCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAG GAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACGEST: gi|125201920|gb|EL216874.1|EL216874
genomic: TTTCCTCTCTGCGTCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAGgtaaatgtaa ... gtgtgattagGAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACG
EST: TTTCCTCTCTGCGTCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAG GAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAEST: gi|19877202|gb|AU238033.1|AU238033
genomic: TTTCCTCTCTGCGTCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAGgtaaatgtaa ... gtgtgattagGAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGA
EST: TTTCCTCTCTGCGTCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAG GAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACG
genomic: TTTCCTCTCTGCGTCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAGgtaaatgtaa ... gtgtgattagGAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACG
ggtcgctctttgtttggactataatgatcagactgctcttgtcttgtgtgattagGAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACGAAGTTATGATGTTGAAGACAGGGTGGTGTCCGTGTCTATACCATCAATA
tataatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattttgatcaaaagattttaactttcgattcttttagtaaatgggtcgctctttgtttggactataatgatcagactgctcttgtcttgtgtgattagGAATCTAAAAATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACGAAGTTATGATGTTGAAGACAGGGTGGTGTCCGTGTCTATACCATCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctct