Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggcctctacctgcttctagtttctattacttcttagctatgcattctctgttgaattcattctgatcccattttgatggtagGAAACGTGTGGTCTCTGGTGTCCAGCCTACAGGTTCAGTTCACTTAGGCAACTATCTCGGGGCTATCAAAAACTGGGTCGCTCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT2G25840.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125060700|gb|EL129377.1|EL129377
EST:     CTCCGTTGCCACAGATGACACTTCTCCTTCTGTAAA                         GAAACGTGTGGTCTCTGGTGTCCAGCCTACAGGTTCAGTTCACTTAGGCAA
genomic: CTCCGTCGCCACAGATGACACTTCTCCTTCTGTAAAgtaatggcct ... ttgatggtagGAAACGTGTGGTCTCTGGTGTCCAGCCTACAGGTTCAGTTCACTTAGGCAA
EST: gi|124715546|gb|EH806948.1|EH806948
EST:     TTCCGATGCTGTTGCTCCGTCGCCACAGATGACACTTCTCCTTCTGTAAA                         GAAACGTGTGGTCTCTGGTGTCCA
genomic: TTCCGATGCTGTTGCTCCGTCGCCACAGATGACACTTCTCCTTCTGTAAAgtaatggcct ... ttgatggtagGAAACGTGTGGTCTCTGGTGTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcttagctatgcattctctgttgaattcattctgatcccattttgatggtagGAAACGTGTGGTCTCTGGTGTCCAGCCTACAGGTTCAGTTCACTTAGGCAACTATCTCGGGGCTATCAAAAACTGGGTCGCTCTTCAG
                                      tcccatttt  CT-rich tract
                          aattcatt  TA-rich tract