1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttattagaaatttcttatggtgaatgttagaaatttgattaggataggaaagcaatttatattgactattgtttttgtattcccctgttcttattgcagAATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTAAGTGGTGATTTATGGAAGTTAAAATGGATGAGTTGGTTCTTGACGTGGA
species | Arabidopsis thaliana |
transcript | AT2G23740.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCTCCACCTGGGTTTGTTGATTGGTCATGTTATTGATCCTCAATTTG AATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTAEST: gi|116402946|gb|EG445538.1|EG445538
genomic: TCACCTCCACCTGGGTTTGTTGATTGGTCATGTTATTGATCTTCAATTTGgtatctttgg ... cttattgcagAATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTA
EST: TCACCTCCACCTGGGTTTGTTGATTGGTCATGTTATTGATCTTCAATTTG AATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTAEST: gi|116402948|gb|EG445540.1|EG445540
genomic: TCACCTCCACCTGGGTTTGTTGATTGGTCATGTTATTGATCTTCAATTTGgtatctttgg ... cttattgcagAATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTA
EST: TCACCTCCACCTGGGTTTGTTGATTGGTCATGTTATTGATCCTCAATTTG AATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTA
genomic: TCACCTCCACCTGGGTTTGTTGATTGGTCATGTTATTGATCTTCAATTTGgtatctttgg ... cttattgcagAATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTA
taggaaagcaatttatattgactattgtttttgtattcccctgttcttattgcagAATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTAAGTGGTGATTTATGGAAGTTAAAATGGATGAGTTGGTTCTTGACGTGGA
tattgac putative branch site (score: 2)
tttttgtattcccctg putative PPT
aatttatattgactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttattagaaatttcttatggtgaatgttagaaatttgattaggataggaaagcaatttatattgactattgtttttgtattcccctgttcttattgcagAATTGTGTGTTTGTATCAAATCCTGGGTTTAAAGAAGTGAAATATCTTCTAAGTGGTGATTTATGGAAGTTAAAATGGATGAGTTGGTTCTTGACGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG