Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggaatatttactgttcttttgagttttgtgtcttagtttctattgtttcttatatatatatatatgatgttggggttctacagGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAATGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACG

Basic information

species Arabidopsis thaliana
transcript AT2G23460.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA01G38890.1 (Glycine max), 3'ss of exon 3
gtgaggaatatttac-tgttcttttgagttttgtg---tcttagtttctattgtttcttatatatatatatatgatgttggggttctacagGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAATGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACG
         |||||  ||   || ||| || | ||   | | | |||  | ||||  |  ||    |    ||    ||  | ||  |||||| ||| |||||||||  || || |||||||| |||||||| |||||||| || ||    ||||| |||||||| ||||||||||| |||||||| || |
---gtattcatttaaatgcatttgtgatttgtatggtttttgaattttgagtgttattactacggttgctgattggtttatgatttcacagGAGGGACAGAAGCCTTCACAAATTATTAGTCCGCATCTGAACGTTGGAGGCCCCATCCAACCGGATGCTAGCAATGGAAACACTCAGGTTTTCATCAATG

upper sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA16G25990.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------------------------------------------------------gtgaggaatatttac----tgttcttttgagttttgtgtcttagtttctattgtttcttatatatatatatatgatgttg-gggttctacagGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAATGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACG
                                                                                                            |  | |||||       ||  |  |   |||| |||||| | || |   ||||  | |   | | | | || |  || || || | ||||||||| |||||||||     || |||||||||||| |||||||||| ||||| || |  ||||| || ||||| |||||||| || |||||||| || |
gtatgtttaattttttttttattctttaatccgcgtgttagtagtattgttagttattgatgtggaagattcgaatccctaatctctcctctcccacttccctccaccactagtatttttgggaggtaatggttttttttttgtcttggatttttgagttttatctcattgtttgtttgtttgtgtggattttgcagGAAGGACAGAAGCCTTGCAGAATTATTAGTCCTCATTTGAATGTTGGGGGTCCCATCAAACCGGATGCAAGCAATGGAAACACACAGGTTTTCATTAATG

upper sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 2
gtgag---gaatatttactgttcttttgagttttgtgtcttagtttcta-ttgtttcttatatatatatatatgatgttggggttctacagGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAATGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACG
||||    || ||  | | |   |||||  | | || | ||  ||  || ||||||   ||  |  |  ||      |     || ||||||||||| ||||||| | | |||| ||||| ||  |||| | |||||||||||| |||||  |  | |||||||| |||||||| ||||||||||| || |
gtgaatgtgattaccttcagacattttgt-tctggtattttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacagGAAGGACAGAAGCCATCTAAGATCATTAGCCCCAATCTAAGTGTTGGAGGTCCCATTAGGGCTAATGCTAGCAATGGAAACACACAAGTTTTCATTAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttagtttctattgtttcttatatatatatatatgatgttggggttctacagGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAATGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACG
     tagtttctattgtttc  TA-rich tract